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1

Extension and verification of the SEIR model on the 2009 influenza A (H1N1) pandemic in Japan

Saito, Masaya M., Imoto, Seiya, Yamaguchi, Rui, Sato, Hiroki, Nakada, Haruka, Kami, Masahiro, Miyano, Satoru, Higuchi, Tomoyuki

Journal:

Mathematical Biosciences

Year:

2013

Language:

english

File:

PDF, 842 KB

english, 2013

2

Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model

Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano

Journal:

Theoretical Computer Science

Year:

2003

Language:

english

File:

PDF, 233 KB

english, 2003

3

Ontology-based instance data validation for high-quality curated biological pathways

Euna Jeong, Masao Nagasaki, Kazuko Ueno, Satoru Miyano

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.00 MB

english, 2011

4

Teachability in computational learning

Ayumi Shinohara, Satoru Miyano

Journal:

New Generation Computing

Year:

1991

Language:

english

File:

PDF, 519 KB

english, 1991

5

Null space based feature selection method for gene expression data

Alok Sharma, Seiya Imoto, Satoru Miyano, Vandana Sharma

Journal:

International Journal of Machine Learning and Cybernetics

Year:

2012

Language:

english

File:

PDF, 286 KB

english, 2012

6

CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML

Li, Chen, Nagasaki, Masao, Ikeda, Emi, Sekiya, Yayoi, Miyano, Satoru

Journal:

Year:

2014

Language:

english

File:

PDF, 2.47 MB

english, 2014

7

A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models

Hasegawa, Takanori, Niida, Atsushi, Mori, Tomoya, Shimamura, Teppei, Yamaguchi, Rui, Miyano, Satoru, Akutsu, Tatsuya, Imoto, Seiya

Journal:

Computational Statistics & Data Analysis

Year:

2016

Language:

english

File:

PDF, 1.34 MB

english, 2016

8

[Lecture Notes in Computer Science] Algorithms and Computation Volume 1178 || Minimum convex partition of a polygon with holes by cuts in given directions

Asano, Tetsuo, Igarashi, Yoshihide, Nagamochi, Hiroshi, Miyano, Satoru, Suri, Subhash

Year:

1996

Language:

english

File:

PDF, 680 KB

english, 1996

9

A novel cell-cycle-indicator, mVenus-p27K−, identifies quiescent cells and visualizes G0–G1 transition

Oki, Toshihiko, Nishimura, Koutarou, Kitaura, Jiro, Togami, Katsuhiro, Maehara, Akie, Izawa, Kumi, Sakaue-Sawano, Asako, Niida, Atsushi, Miyano, Satoru, Aburatani, Hiroyuki, Kiyonari, Hiroshi, Miyawak

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 1.69 MB

english, 2014

10

Analysis of Questionnaire for Traditional Medicine and Development of Decision Support System

Katayama, Kotoe, Yamaguchi, Rui, Imoto, Seiya, Watanabe, Kenji, Miyano, Satoru

Journal:

Evidence-based Complementary and Alternative Medicine

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

11

The Difference between the Two Representative Kampo Formulas for Treating Dysmenorrhea: An Observational Study

Yoshino, Tetsuhiro, Katayama, Kotoe, Horiba, Yuko, Munakata, Kaori, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru, Mima, Hideki, Watanabe, Kenji, Mimura, Masaru

Journal:

Evidence-based Complementary and Alternative Medicine

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

12

Contribution of comparative fish studies to general endocrinology: structure and function of some osmoregulatory hormones

Yoshio Takei, Akatsuki Kawakoshi, Takehiro Tsukada, Shinya Yuge, Maho Ogoshi, Koji Inoue, Susumu Hyodo, Hideo Bannai, Satoru Miyano

Journal:

Journal of Experimental Zoology Part A Ecological Genetics and Physiology

Year:

2006

Language:

english

File:

PDF, 204 KB

english, 2006

13

One-way weak-stack-counter automata

Journal:

Journal of Computer and System Sciences

Year:

1980

Language:

english

File:

PDF, 994 KB

english, 1980

14

Remarks on multihead pushdown automata and multihead stack automata

Journal:

Journal of Computer and System Sciences

Year:

1983

Language:

english

File:

PDF, 660 KB

english, 1983

15

Two-way deterministic multi-weak-counter machines

Journal:

Theoretical Computer Science

Year:

1982

Language:

english

File:

PDF, 1.37 MB

english, 1982

16

Alternating finite automata on ω-words

Satoru Miyano, Takeshi Hayashi

Journal:

Theoretical Computer Science

Year:

1984

Language:

english

File:

PDF, 1.04 MB

english, 1984

17

ΔP2-complete lexicographically first maximal subgraph problems

Journal:

Theoretical Computer Science

Year:

1991

Language:

english

File:

PDF, 1.47 MB

english, 1991

18

Inferring a tree from walks

Osamu Maruyama, Satoru Miyano

Journal:

Theoretical Computer Science

Year:

1996

Language:

english

File:

PDF, 824 KB

english, 1996

19

Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data

Sunyong Kim, Seiya Imoto, Satoru Miyano

Journal:

Year:

2004

Language:

english

File:

PDF, 310 KB

english, 2004

20

The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis

Jin Hwan Do, Masao Nagasaki, Satoru Miyano

Journal:

Year:

2010

Language:

english

File:

PDF, 991 KB

english, 2010

21

On the complexity of deriving position specific score matrices from positive and negative sequences

Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott

Journal:

Discrete Applied Mathematics

Year:

2007

Language:

english

File:

PDF, 214 KB

english, 2007

22

Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks

Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Satoru Miyano

Journal:

Statistical Methodology

Year:

2006

Language:

english

File:

PDF, 1.87 MB

english, 2006

23

Fast algorithm for extracting multiple unordered short motifs using bit operations

Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano

Journal:

Information Sciences

Year:

2002

Language:

english

File:

PDF, 262 KB

english, 2002

24

A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis

Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara

Journal:

Theoretical Computer Science

Year:

2003

Language:

english

File:

PDF, 186 KB

english, 2003

25

Foreword

Journal:

Theoretical Computer Science

Year:

1999

Language:

english

File:

PDF, 104 KB

english, 1999

26

On the approximation of protein threading

Tatsuya Akutsu, Satoru Miyano

Journal:

Theoretical Computer Science

Year:

1999

Language:

english

File:

PDF, 989 KB

english, 1999

27

ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information

Shin Suzuki, Tomohiro Yasuda, Yuichi Shiraishi, Satoru Miyano, Masao Nagasaki

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 580 KB

english, 2011

28

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing

Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh, Satoru Miyano

Journal:

Year:

2012

Language:

english

File:

PDF, 1.45 MB

english, 2012

29

2D-Qsar for 450 types of amino acid induction peptides with a novel substructure pair descriptor having wider scope

Tsutomu Osoda, Satoru Miyano

Journal:

Journal of Cheminformatics

Year:

2011

Language:

english

File:

PDF, 980 KB

english, 2011

30

A hierarchy theorem for multihead stack-counter automata

Journal:

Acta Informatica

Year:

1982

Language:

english

File:

PDF, 235 KB

english, 1982

31

The lexicographically first maximal subgraph problems:P-completeness andNCalgorithms

Journal:

Theory of Computing Systems

Year:

1989

Language:

english

File:

PDF, 1.16 MB

english, 1989

32

Polynomial-time learning of elementary formal systems

Satoru Miyano, Ayumi Shinohara, Takeshi Shinohara

Journal:

New Generation Computing

Year:

2000

Language:

english

File:

PDF, 1.35 MB

english, 2000

33

The GC and window-averaged DNA curvature profile of secondary metabolite gene cluster inAspergillus fumigatusgenome

Jin Hwan Do, Satoru Miyano

Journal:

Applied Microbiology and Biotechnology

Year:

2008

Language:

english

File:

PDF, 430 KB

english, 2008

34

Immunological investigation of the hepatic tissue from infants with biliary atresia

Haruna Baba, Yoshikazu Ohtsuka, Tohru Fujii, Hidenori Haruna, Satoru Nagata, Hiroyuki Kobayashi, Atsuyuki Yamataka, Toshiaki Shimizu, Takeshi Miyano, Yuichiro Yamashiro

Journal:

Pediatric Surgery International

Year:

2009

Language:

english

File:

PDF, 222 KB

english, 2009

35

Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine

Yoko Watanabe-Fukuda, Masahiro Yamamoto, Naoko Miura, Masato Fukutake, Atsushi Ishige, Rui Yamaguchi, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano, Junzo Takeda, Kenji Watanabe

Journal:

Journal of Gastroenterology

Year:

2009

Language:

english

File:

PDF, 354 KB

english, 2009

36

Hybrid Petri net based modeling for biological pathway simulation

Hiroshi Matsuno, Masao Nagasaki, Satoru Miyano

Journal:

Natural Computing

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

37

Network-Based Predictions and Simulations by Biological State Space Models: Search for Drug Mode of Action

Rui Yamaguchi, Seiya Imoto, Satoru Miyano

Journal:

Journal of Computer Science and Technology

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

38

Modelling and simulation of signal transductions in an apoptosis pathway by using timed Petri nets

Li Chen, Ge Qi-Wei, Mitsuru Nakata, Hiroshi Matsuno, Satoru Miyano

Journal:

Journal of Biosciences

Year:

2007

Language:

english

File:

PDF, 1.41 MB

english, 2007

39

Transcriptional profiling of hematopoietic stem cells by high-throughput sequencing

Yoshimi Yashiro, Hideo Bannai, Takashi Minowa, Tomohide Yabiku, Satoru Miyano, Mitsujiro Osawa, Atsushi Iwama, Hiromitsu Nakauchi

Journal:

International Journal of Hematology

Year:

2009

Language:

english

File:

PDF, 548 KB

english, 2009

40

Using maximal independent sets to solve problems in parallel

Takayoshi Shoudai, Satoru Miyano

Journal:

Theoretical Computer Science

Year:

1995

Language:

english

File:

PDF, 583 KB

english, 1995

41

MRG-binding protein contributes to colorectal cancer development

Kiyoshi Yamaguchi, Michihiro Sakai, JooHun Kim, Shin-ichiro Tsunesumi, Tomoaki Fujii, Tsuneo Ikenoue, Yoshinao Yamada, Yoshiyuki Akiyama, Yasuhiko Muto, Rui Yamaguchi, Satoru Miyano, Yusuke Nakamura,

Journal:

Year:

2011

Language:

english

File:

PDF, 330 KB

english, 2011

42

A machine discovery from amino acid sequences by decision trees over regular patterns

Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara, Satoru Kuhara, Yasuhito Mukouchi, Takeshi Shinohara

Journal:

New Generation Computing

Year:

1993

Language:

english

File:

PDF, 862 KB

english, 1993

43

Remarks on two-way automata with weak-counters

Journal:

Information Processing Letters

Year:

1984

Language:

english

File:

PDF, 263 KB

english, 1984

44

A parallelizable lexicographically first maximal edge-induced subgraph problem

Journal:

Information Processing Letters

Year:

1988

Language:

english

File:

PDF, 325 KB

english, 1988

45

Clustering for Visual Analogue Scale Data in Symbolic Data Analysis

Kotoe Katayama, Rui Yamaguchi, Seiya Imoto, Keiko Matsuura, Kenji Watanabe, Satoru Miyano

Journal:

Procedia Computer Science

Year:

2011

Language:

english

File:

PDF, 351 KB

english, 2011

46

BFL: a node and edge betweenness based fast layout algorithm for large scale networks

Tatsunori B Hashimoto, Masao Nagasaki, Kaname Kojima, Satoru Miyano

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.01 MB

english, 2009

47

The impact of measurement errors in the identification of regulatory networks

André Fujita, Alexandre G Patriota, João R Sato, Satoru Miyano

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 576 KB

english, 2009

48

An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information

Kaname Kojima, Masao Nagasaki, Satoru Miyano

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 3.32 MB

english, 2010

49

AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction

Ayumu Saito, Masao Nagasaki, Masaaki Oyama, Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 436 KB

english, 2007

50

An efficient grid layout algorithm for biological networks utilizing various biological attributes

Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.10 MB

english, 2007